Only thing I would be careful of is the length and gauge of the wires between the batteries. Traditionally, there is usually a very short (less than 1') distance between the batteries with a pretty heavy wire, which is cheap at that distance. This results in a relatively small voltage drop across the 1' jumper.
With a long run (15ft??) between the batteries, you'll have a much larger voltage drop (2-3 Volts). This will cause a much heavier draw on the battery that is closer to the electric motor, and will probably cause you to have a shorter overall life on that battery. I would keep a good eye on the voltage level of each battery to make sure you don't over discharge one of them routinely.
To prevent that, I would up-size the wire gauge between the batteries as much as I could afford. It will probably pay off in battery life in the long run.
Good luck!